First, irritation from BCG is quite common (often called BCG-cystitis.) So it is likely that this is what your father has.
However, it DOES need to be checked out.
If it should be a return of the CIS, and there is no evidence of a spread into the muscle, a second trial of BCG or BCG with interferon is often effective, avoiding a radical cystectomy. However, if the second trial does not work a cystectomy can be life saving.
Here's hoping it is a BCG effect!!!
Sara Anne